Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21113901_21114138_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

21113901 - 21114138

Intron Length:

238

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACCGGGA

5'SS Class:

major

3'SS Sequence:

CTCTCTCCCGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCGCCAT

U12 Branch Point Sequence:

GCCGCCGCCATG

Flanking Amino Acid:

PAAASAVTAQEEQLFKAWML

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.2

0.36

1.3

55.1

44.1

Major BPS

-0.3

1.4

49.7

Major PPT

77.9

0.63

0.7

72.8

25.4

Minor 5ss

33.1

-1.9

3.7

47.2

48.2

Minor BPS

33.3

-1.4

2.3

31.06

41.9

Associated Gene:

Gene:

CTSH

Ensembl Gene ID:

ENSAPLG00000006722

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006982

21107439 - 21114211

6773

ENSAPLT00000023606

21107439 - 21115478

8040