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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21117810_21118234_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21117810 - 21118234
Intron Length:
425

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTCGCTCCTGAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
CGTTTCCCATTC
Flanking Amino Acid:
RFKNLREALKNCDPPCVPYL
Intron Amino Acid Position:
1084

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
79
35.3
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
68
0.41
1
68.1
32.5
Minor 5ss
38
-1.4
3.3
49.5
41.1
Minor BPS
42
-0.6
2
51.43
40

Associated Gene:

Gene:
RASGRF1
Ensembl Gene ID:
ENSAPLG00000006206
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006489
21115386 - 21134614
19229