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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21118315_21118814_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21118315 - 21118814
Intron Length:
500

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGCGC
5'SS Class:
major
3'SS Sequence:
GGGTCTCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAC
U12 Branch Point Sequence:
CTGCCCCAAACC
Flanking Amino Acid:
KKTWLKVSKQTKALIDKLQK
Intron Amino Acid Position:
1058

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1.1
59.1
42.5
Major BPS
62.4
0.31
1.2
72.4
34.6
Major PPT
73.1
0.52
1
65.7
40.9
Minor 5ss
30
-2.3
3.4
42
44.8
Minor BPS
47.7
-0.1
2
60.47
44.7

Associated Gene:

Gene:
RASGRF1
Ensembl Gene ID:
ENSAPLG00000006206
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006489
21115386 - 21134614
19229