Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21121209_21121547_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

21121209 - 21121547

Intron Length:

339

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAAGGGC

5'SS Class:

major

3'SS Sequence:

TTTTGTGCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AGCTGAG

U12 Branch Point Sequence:

GCTTCCCCAGCT

Flanking Amino Acid:

QERKAAANIIRTLTQEDPGD

Intron Amino Acid Position:

908

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.5

0.67

66.2

39.3

Major BPS

47.4

-0.1

1.5

42.8

41.8

Major PPT

82.8

0.74

0.9

77.3

Minor 5ss

28.9

-2.4

3.6

41.1

45.6

Minor BPS

47.8

-0

2.1

70.17

Associated Gene:

Gene:

RASGRF1

Ensembl Gene ID:

ENSAPLG00000006206

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006489

21115386 - 21134614

19229