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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21121661_21122448_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21121661 - 21122448
Intron Length:
788

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGCTCG
5'SS Class:
major
3'SS Sequence:
CCTGTTTTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
ATTGATTCAAGT
Flanking Amino Acid:
LRHWVSKHSQDFETNEELKF
Intron Amino Acid Position:
871

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
61.1
40.2
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
75.1
0.57
1
72
38
Minor 5ss
44.8
-0.6
2.7
56.2
48.2
Minor BPS
46.2
-0.2
2
67.25
43.6

Associated Gene:

Gene:
RASGRF1
Ensembl Gene ID:
ENSAPLG00000006206
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006489
21115386 - 21134614
19229