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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21122556_21122797_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21122556 - 21122797
Intron Length:
242

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACACGGC
5'SS Class:
major
3'SS Sequence:
GCCGTCCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTAAA
U12 Branch Point Sequence:
CTGTGCTAAATG
Flanking Amino Acid:
KYRRMSLASAGFPTDQRNGD
Intron Amino Acid Position:
835

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.4
0.43
1.1
55
43
Major BPS
70.1
0.5
1.1
69.9
35.3
Major PPT
72.7
0.51
0.9
65
36.3
Minor 5ss
35
-1.7
3.6
50.3
46.3
Minor BPS
47.6
-0.3
2.2
54.19
47.5

Associated Gene:

Gene:
RASGRF1
Ensembl Gene ID:
ENSAPLG00000006206
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006489
21115386 - 21134614
19229