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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21124290_21124638_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21124290 - 21124638
Intron Length:
349

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGGCCC
5'SS Class:
major
3'SS Sequence:
TCCCTCTGCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGCCAG
U12 Branch Point Sequence:
TCGCCCTTCTCC
Flanking Amino Acid:
YKKPISAIPARSLELLFANS
Intron Amino Acid Position:
612

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
57.8
41.3
Major BPS
38.3
-0.7
1.7
43.9
48.6
Major PPT
71.3
0.48
0.9
64.2
36.6
Minor 5ss
27.1
-2.6
3.1
35.1
41
Minor BPS
40.3
-0.7
3.5
59.3
45.7

Associated Gene:

Gene:
RASGRF1
Ensembl Gene ID:
ENSAPLG00000006206
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006489
21115386 - 21134614
19229