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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21124888_21125344_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21124888 - 21125344
Intron Length:
457

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACAGAT
U12 Branch Point Sequence:
CAGGCTGGAACC
Flanking Amino Acid:
NSKVTVPQMIKSDASLYCDD
Intron Amino Acid Position:
529

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
77.7
30.1
Major BPS
54
0.1
1
50.3
35.4
Major PPT
86.6
0.82
0.7
81.5
30.6
Minor 5ss
31.6
-2.1
3.2
41.8
38.8
Minor BPS
41.9
-0.6
2.1
47.49
42.4

Associated Gene:

Gene:
RASGRF1
Ensembl Gene ID:
ENSAPLG00000006206
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006489
21115386 - 21134614
19229