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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21125428_21125630_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21125428 - 21125630
Intron Length:
203

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGACCG
5'SS Class:
major
3'SS Sequence:
GTGCCACTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCCCAC
U12 Branch Point Sequence:
CCTCTCCCACGT
Flanking Amino Acid:
KAAWTSDISQCVDNIRCNGL
Intron Amino Acid Position:
502

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.1
60
44.9
Major BPS
50
0
1.2
61.8
35.9
Major PPT
70.5
0.46
1
62.5
38.7
Minor 5ss
30.9
-2.2
3.3
39.5
45.9
Minor BPS
36
-0.9
2.1
49.26
44.2

Associated Gene:

Gene:
RASGRF1
Ensembl Gene ID:
ENSAPLG00000006206
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006489
21115386 - 21134614
19229