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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21125768_21126417_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21125768 - 21126417
Intron Length:
650

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAGGTGCC
5'SS Class:
major
3'SS Sequence:
TCCTATTCCAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCTAT
U12 Branch Point Sequence:
TTTTTCCTATTC
Flanking Amino Acid:
IEEQESTDEDAKASGQDIDH
Intron Amino Acid Position:
456

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
68.2
38.6
Major BPS
68.8
0.47
1.3
66.7
41.7
Major PPT
65.8
0.36
1
66.4
33.1
Minor 5ss
33
-1.9
3.4
44.8
43.3
Minor BPS
57
0.2
1.9
74.44
36.6

Associated Gene:

Gene:
RASGRF1
Ensembl Gene ID:
ENSAPLG00000006206
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006489
21115386 - 21134614
19229