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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21126482_21127185_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21126482 - 21127185
Intron Length:
704

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CCCTGCTCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
CACCTCTGACCT
Flanking Amino Acid:
GSGGKLHLTKNGVISLIDCT
Intron Amino Acid Position:
435

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
71.2
34.2
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
75.3
0.57
0.8
68.4
31.9
Minor 5ss
27.1
-2.6
3.2
35
41.6
Minor BPS
46.3
-0.2
1.7
58.77
44.2

Associated Gene:

Gene:
RASGRF1
Ensembl Gene ID:
ENSAPLG00000006206
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006489
21115386 - 21134614
19229