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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21128563_21128942_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21128563 - 21128942
Intron Length:
380

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGACCGCG
5'SS Class:
major
3'SS Sequence:
TGCTGCGCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTGAT
U12 Branch Point Sequence:
CACGGCTGATGC
Flanking Amino Acid:
ETFLTYPMFQIPRYILTLHE
Intron Amino Acid Position:
305

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.4
0.46
1.2
56.7
42.7
Major BPS
58.4
0.21
1.4
51.1
46.3
Major PPT
69.4
0.44
1
61.7
40
Minor 5ss
36.8
-1.5
3.3
47.6
48
Minor BPS
34.3
-1.2
2.1
35.3
41.3

Associated Gene:

Gene:
RASGRF1
Ensembl Gene ID:
ENSAPLG00000006206
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006489
21115386 - 21134614
19229