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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21129137_21129642_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21129137 - 21129642
Intron Length:
506

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGCTCGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CGCCCAC
U12 Branch Point Sequence:
TCGCGCCCACCT
Flanking Amino Acid:
RISSWPTLVLADLFDILLPM
Intron Amino Acid Position:
240

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
69.3
35.8
Major BPS
44
-0.3
1.2
47.5
37.7
Major PPT
81.9
0.72
0.8
76.8
31.8
Minor 5ss
28.1
-2.5
3
27.7
36.2
Minor BPS
37.5
-0.8
2.2
54.05
47.1

Associated Gene:

Gene:
RASGRF1
Ensembl Gene ID:
ENSAPLG00000006206
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006489
21115386 - 21134614
19229