Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21200794_21201278_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

21200794 - 21201278

Intron Length:

485

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACTGCCC

5'SS Class:

major

3'SS Sequence:

TCTCCTTGCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCAGCAT

U12 Branch Point Sequence:

CCACCAGCATCT

Flanking Amino Acid:

RGIKFTLDYQVITGGHYDVD

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.6

0.42

1.1

54.4

42.9

Major BPS

45.4

-0.2

1.4

51.3

42.7

Major PPT

75.8

0.58

0.9

32.5

Minor 5ss

-2.2

3.4

43.3

43.9

Minor BPS

34.5

-1.1

2.2

47.57

44.4

Associated Gene:

Gene:

TMED3

Ensembl Gene ID:

ENSAPLG00000006204

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006420

21200653 - 21202139

1487