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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21201528_21201902_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21201528 - 21201902
Intron Length:
375

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGTTGC
5'SS Class:
strong_major
3'SS Sequence:
CTTGTCCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCGCAA
U12 Branch Point Sequence:
TCGCAAGCAACA
Flanking Amino Acid:
MSSRVTALTQMESACVTIHE
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
69.4
38.2
Major BPS
49.4
-0
1.3
61
37.5
Major PPT
75
0.56
0.8
66
35.9
Minor 5ss
34
-1.8
3
44
43.8
Minor BPS
36.9
-1
2.3
47.31
42.2

Associated Gene:

Gene:
TMED3
Ensembl Gene ID:
ENSAPLG00000006204
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006420
21200653 - 21202139
1487