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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21204929_21205213_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21204929 - 21205213
Intron Length:
285

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCCCGCC
5'SS Class:
major
3'SS Sequence:
GCTCTGCCTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCAAAC
U12 Branch Point Sequence:
TGGCACCAAACC
Flanking Amino Acid:
LLSAALSLPQLFLFRTVTLQ
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.7
0.25
1.2
51.3
40.4
Major BPS
48.4
-0.1
1
52.9
28.9
Major PPT
72.3
0.5
0.9
61.8
40
Minor 5ss
36.6
-1.5
3.5
51
45.8
Minor BPS
43.3
-0.5
2.1
54.66
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017865
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041538
21204101 - 21205960
1860