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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21216730_21216824_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21216730 - 21216824
Intron Length:
95

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
GTCCCTGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
GGGTCTTCACAC
Flanking Amino Acid:
QIIDDAFNLARAKYVDVTLA
Intron Amino Acid Position:
664

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
72.2
39.5
Major BPS
77.5
0.68
1
79.6
33
Major PPT
71.9
0.49
0.9
65
36.3
Minor 5ss
34.3
-1.8
2.9
43
44.2
Minor BPS
43.9
-0.4
1.8
49.33
40.7

Associated Gene:

Gene:
ANPEP
Ensembl Gene ID:
ENSAPLG00000005574
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024084
21214670 - 21223642
8973
ENSAPLT00000005807
21207285 - 21220618
13334