About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21217097_21217214_R


Intron Information:

Intron Rank:
11

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
21217097 - 21217214

Intron Length:
118

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTACGGCGC

5'SS Class:
major

3'SS Sequence:
TCTCCCCTTTCAG|A

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
AGGTCAC

U12 Branch Point Sequence:
GAGAGCAGACCT

Flanking Amino Acid:
GSRYWLVEVSDTNSTFKVDS

Intron Amino Acid Position:
601

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
77.1
0.64
1.1
59.1
42.5

Major BPS
51
0.02
1.3
54.8
42.1

Major PPT
83.9
0.76
0.7
80.9
24.3

Minor 5ss
30
-2.3
3.4
42
44.8

Minor BPS
36.1
-0.9
2.1
48.79
43.4

Associated Gene:

Gene:
ANPEP

Ensembl Gene ID:

Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

21214670 - 21223642
8973

21207285 - 21220618
13334