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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21220619_21223550_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
21220619 - 21223550
Intron Length:
2932

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTCCG
5'SS Class:
major
3'SS Sequence:
CCTCCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTGAC
U12 Branch Point Sequence:
TGTGACTCAGCT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
62.3
43.9
Major BPS
59
0.22
1.2
52.4
43.3
Major PPT
84.7
0.78
0.7
79.4
25.9
Minor 5ss
28.7
-2.4
2.7
25.5
36.2
Minor BPS
47.6
-0.1
2
70.42
45.8

Associated Gene:

Gene:
ANPEP
Ensembl Gene ID:
ENSAPLG00000005574
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024084
21214670 - 21223642
8973