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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21225912_21229046_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21225912 - 21229046
Intron Length:
3135

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTGTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCGCAG
U12 Branch Point Sequence:
GTGTTCGCAGCC
Flanking Amino Acid:
ELDLIFHMDKVHYILQEVVM
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
0.9
71.9
34.5
Major BPS
48.4
-0.1
1.7
65.3
43.7
Major PPT
81.2
0.7
0.9
72.6
42.4
Minor 5ss
34.6
-1.7
3.1
44.1
43.8
Minor BPS
42.2
-0.6
2.3
54.78
43.4

Associated Gene:

Gene:
AP3S2
Ensembl Gene ID:
ENSAPLG00000005458
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005639
21225016 - 21231188
6173