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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21230666_21230756_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21230666 - 21230756
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACCGCC
5'SS Class:
major
3'SS Sequence:
CGTGTCCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
CGCTCCTGAAGC
Flanking Amino Acid:
EHICNFLECGSLFGGADYKL
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.2
65.5
42
Major BPS
69.6
0.49
1
59.5
39
Major PPT
69.3
0.43
0.9
62.1
34.8
Minor 5ss
43.1
-0.8
3.2
60
44.7
Minor BPS
52
0.04
1.8
59.68
45.2

Associated Gene:

Gene:
AP3S2
Ensembl Gene ID:
ENSAPLG00000005458
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005639
21225016 - 21231188
6173