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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21270770_21270907_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21270770 - 21270907
Intron Length:
138

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGCGGG
5'SS Class:
major
3'SS Sequence:
TGCTGCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGGTGAC
U12 Branch Point Sequence:
CTGCCGGTGACC
Flanking Amino Acid:
GKLDSNPELIKFAQTLEKVC
Intron Amino Acid Position:
341

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1
56.9
42.6
Major BPS
47.5
-0.1
1.3
38.2
41.7
Major PPT
68.3
0.41
0.9
58.3
38.5
Minor 5ss
32
-2.1
3.3
37.7
41.5
Minor BPS
41.8
-0.6
2.6
54.6
44.1

Associated Gene:

Gene:
IDH2
Ensembl Gene ID:
ENSAPLG00000027640
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044475
21269832 - 21273447
3616