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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21271193_21271288_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21271193 - 21271288
Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGTGCCG
5'SS Class:
major
3'SS Sequence:
CGTCCCACCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
CCACCCTGACCC
Flanking Amino Acid:
GDVQSDILAQGFGSLGLMTS
Intron Amino Acid Position:
271

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.4
0.39
1.2
50.7
45.7
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
66
0.36
0.9
58.7
31.4
Minor 5ss
29.7
-2.3
3.4
39.4
46
Minor BPS
47.4
-0.2
1.8
53.45
43.9

Associated Gene:

Gene:
IDH2
Ensembl Gene ID:
ENSAPLG00000027640
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044475
21269832 - 21273447
3616