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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21271441_21271592_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21271441 - 21271592
Intron Length:
152

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTACGGAGC
5'SS Class:
major
3'SS Sequence:
CTCTGGCTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTCAC
U12 Branch Point Sequence:
TGACACTCACGC
Flanking Amino Acid:
FKDIFQEIFDKHYKTEFDKL
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.1
61.7
43.2
Major BPS
64.9
0.37
1
67
29.8
Major PPT
70.6
0.46
0.9
60.8
40.3
Minor 5ss
33.3
-1.9
3.4
42.5
38.9
Minor BPS
39.3
-0.8
2
47.11
41.3

Associated Gene:

Gene:
IDH2
Ensembl Gene ID:
ENSAPLG00000027640
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044475
21269832 - 21273447
3616