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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21272026_21272112_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21272026 - 21272112
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCCA
5'SS Class:
strong_major
3'SS Sequence:
GCCGCCCCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAGTGAC
U12 Branch Point Sequence:
CCTGCAGTGACA
Flanking Amino Acid:
TIGRHAHGDQYKATDFVVNK
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
0.9
67.6
39.4
Major BPS
51.2
0.03
1.2
44.4
38.7
Major PPT
66.5
0.37
0.9
57.9
33.2
Minor 5ss
32.7
-2
3
39.6
45.9
Minor BPS
43.4
-0.5
2.3
54.8
44.4

Associated Gene:

Gene:
IDH2
Ensembl Gene ID:
ENSAPLG00000027640
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044475
21269832 - 21273447
3616