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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_2127837_2127989_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2127837 - 2127989
Intron Length:
153

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTATG
5'SS Class:
strong_major
3'SS Sequence:
AACTCATGCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAC
Flanking Amino Acid:
ETHDSDINSVRYYPSGDAFA
Intron Amino Acid Position:
246

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1.2
81.8
38.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
61
0.25
1
53.8
39.7
Minor 5ss
34.8
-1.7
2.7
42.5
44.3
Minor BPS
76.4
0.81
1.2
82.98
29.8

Associated Gene:

Gene:
GNB5
Ensembl Gene ID:
ENSAPLG00000004949
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018820
2122928 - 2139321
16394
ENSAPLT00000005109
2122928 - 2143011
20084