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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21288295_21288429_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21288295 - 21288429
Intron Length:
135

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTACGTGCC
5'SS Class:
major
3'SS Sequence:
TCTCCCTCCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCCCAT
U12 Branch Point Sequence:
TGACCCCCATCT
Flanking Amino Acid:
SPVPEPRPGTCITSHTRHLK
Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1.1
66.4
40.8
Major BPS
48.9
-0
1.3
58
39.1
Major PPT
77.4
0.62
0.7
69.1
31.4
Minor 5ss
33.4
-1.9
3.3
45
43
Minor BPS
44.7
-0.3
2.1
65
44.3

Associated Gene:

Gene:
SEMA4B
Ensembl Gene ID:
ENSAPLG00000010610
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011056
21286054 - 21290333
4280
ENSAPLT00000034134
21286502 - 21291333
4832