Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21288641_21288757_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

21288641 - 21288757

Intron Length:

117

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTGGGTGCA

5'SS Class:

major

3'SS Sequence:

CTTGTGTTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCCTCAG

U12 Branch Point Sequence:

GTGTCCTCAGCC

Flanking Amino Acid:

GTYDVLFLGTDDGRLHKAVH

Intron Amino Acid Position:

336

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.7

0.51

1.1

38.8

Major BPS

58.4

0.21

1.5

67.6

40.6

Major PPT

82.4

0.73

0.9

76.3

37.7

Minor 5ss

25.7

-2.8

3.1

23.1

37.4

Minor BPS

56.7

0.19

1.8

67.79

43.4

Associated Gene:

Gene:

SEMA4B

Ensembl Gene ID:

ENSAPLG00000010610

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034134

21286502 - 21291333

4832

ENSAPLT00000011056

21286054 - 21290333

4280