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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21289425_21289557_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21289425 - 21289557
Intron Length:
133

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATGC
5'SS Class:
strong_major
3'SS Sequence:
TGTCTCCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTGAC
U12 Branch Point Sequence:
TGTCTCCCCACA
Flanking Amino Acid:
QPRPRILLTPASGTPCQQIQ
Intron Amino Acid Position:
461

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.8
72
34.3
Major BPS
53.9
0.1
1.2
46.4
38.9
Major PPT
75.8
0.58
0.8
69.2
31.5
Minor 5ss
32.8
-2
3
41.8
45
Minor BPS
42.7
-0.5
2.1
58.52
40.6

Associated Gene:

Gene:
SEMA4B
Ensembl Gene ID:
ENSAPLG00000010610
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034134
21286502 - 21291333
4832
ENSAPLT00000011056
21286054 - 21290333
4280