Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21292657_21292923_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

21292657 - 21292923

Intron Length:

267

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACCGTGG

5'SS Class:

major

3'SS Sequence:

GTGTCTCTTGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCAGAA

U12 Branch Point Sequence:

AGATGCAGAACT

Flanking Amino Acid:

HVVSRSPDFVSSFKIVL*

Intron Amino Acid Position:

172

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

64.5

0.34

1.3

52.4

46.9

Major BPS

49.9

-0

1.1

46.7

38.9

Major PPT

79.7

0.67

0.9

73.4

Minor 5ss

40.6

-1

3.4

48.2

Minor BPS

46.4

-0.1

2.1

66.6

43.1

Associated Gene:

Gene:

CIB1

Ensembl Gene ID:

ENSAPLG00000010975

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011435

21292635 - 21294673

2039