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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21293013_21293092_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21293013 - 21293092
Intron Length:
80

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTGAGGACC
5'SS Class:
major
3'SS Sequence:
CTCTCCCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTCAC
U12 Branch Point Sequence:
CAGAGCTCACTG
Flanking Amino Acid:
NAEMEQLIENILEESDIDKD
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.2
0.45
1.3
66.5
39.1
Major BPS
61
0.28
1.1
63.1
35.8
Major PPT
79.6
0.67
0.7
73.3
24.9
Minor 5ss
29.5
-2.4
3
34.7
34
Minor BPS
36.5
-1.1
2
32.86
40.9

Associated Gene:

Gene:
CIB1
Ensembl Gene ID:
ENSAPLG00000010975
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011435
21292635 - 21294673
2039