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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21293623_21293969_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21293623 - 21293969
Intron Length:
347

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTACGGAGC
5'SS Class:
major
3'SS Sequence:
CCCATCCCGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCCCAT
U12 Branch Point Sequence:
CTGCCCTGAGCC
Flanking Amino Acid:
SRILTLPELRANPFQHRICR
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.1
58.9
46
Major BPS
48.9
-0
1.3
58
39.1
Major PPT
62.7
0.29
1
57.5
33.2
Minor 5ss
31.1
-2.2
3.3
34
41.7
Minor BPS
49.9
-0
1.8
60.89
44

Associated Gene:

Gene:
CIB1
Ensembl Gene ID:
ENSAPLG00000010975
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011435
21292635 - 21294673
2039