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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21294992_21301544_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
21294992 - 21301544
Intron Length:
6553

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGT|GTACGGGGA
5'SS Class:
weak_major
3'SS Sequence:
CTTTCAATTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCAAT
U12 Branch Point Sequence:
TCTCTTTCAATT
Flanking Amino Acid:
PPDIPEPEDFVIPSINLTTC
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.2
0.17
1.2
48.1
42.6
Major BPS
76.9
0.67
1.2
85
31.9
Major PPT
80
0.67
0.9
70.8
38.8
Minor 5ss
29.5
-2.3
3.7
37.3
47.4
Minor BPS
57.6
0.32
1.5
72.72
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003844
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003928
21294672 - 21311428
16757