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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21303135_21304340_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21303135 - 21304340
Intron Length:
1206

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTGAGTGAT
5'SS Class:
major
3'SS Sequence:
CTTCGTTGTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
CAGCTTCTAACA
Flanking Amino Acid:
IFPRTWCLPADYGDFQAYRR
Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.55
1
71.2
34.5
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
77.1
0.61
1
71.5
38.3
Minor 5ss
30.2
-2.3
3.2
36.5
41.7
Minor BPS
47.6
-0.1
1.6
53.91
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003844
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003928
21294672 - 21311428
16757