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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21304498_21304772_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21304498 - 21304772
Intron Length:
275

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGGAG
5'SS Class:
major
3'SS Sequence:
TTTTTTCTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TTTTTTCTCACA
Flanking Amino Acid:
HMICQQYISKPFLIDGFKFD
Intron Amino Acid Position:
257

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
65.9
39.9
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
91.7
0.94
0.6
87.8
22.4
Minor 5ss
28.6
-2.4
3.5
37.4
47.3
Minor BPS
53.7
0.11
2
75.11
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003844
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003928
21294672 - 21311428
16757