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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21304917_21306034_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21304917 - 21306034
Intron Length:
1118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAAAAAG
5'SS Class:
major
3'SS Sequence:
GTTCCTCTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTAAT
U12 Branch Point Sequence:
AGTTAATGAAAG
Flanking Amino Acid:
RYIDPSRRNLGDICMHLTNY
Intron Amino Acid Position:
305

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1
66.7
38.5
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
79.6
0.67
0.8
77
31.7
Minor 5ss
32.3
-2
3
36.8
41.6
Minor BPS
44.3
-0.5
2
51.98
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003844
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003928
21294672 - 21311428
16757