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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21306488_21307098_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21306488 - 21307098
Intron Length:
611

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTGTTTTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTCGAT
U12 Branch Point Sequence:
GTTCGATCAGCT
Flanking Amino Acid:
DRKLKPWLLEVNHSPSFTTD
Intron Amino Acid Position:
409

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
80
29.3
Major BPS
56
0.15
1.5
58.2
48.3
Major PPT
78.9
0.65
1
76.3
37.7
Minor 5ss
26.1
-2.7
2.9
29.9
43.2
Minor BPS
41.7
-0.5
2.3
64.31
45.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003844
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003928
21294672 - 21311428
16757