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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21309014_21309352_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21309014 - 21309352
Intron Length:
339

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTTGC
5'SS Class:
major
3'SS Sequence:
TCCTGAGATATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTAAC
U12 Branch Point Sequence:
TTTGCTGTAACT
Flanking Amino Acid:
SRSTETQDKKQVQYDSMQPQ
Intron Amino Acid Position:
595

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1.1
66.2
40.6
Major BPS
62.2
0.3
1.2
65
38.7
Major PPT
60.8
0.24
1
54
39.8
Minor 5ss
39.5
-1.2
3
53.6
43.4
Minor BPS
64.3
0.53
2.1
87.23
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003844
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003928
21294672 - 21311428
16757