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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21309545_21310802_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21309545 - 21310802
Intron Length:
1258

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTGAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGCCAA
U12 Branch Point Sequence:
CTTTCTTTCCTT
Flanking Amino Acid:
RSSPVTSEIQSQFLWDKLQG
Intron Amino Acid Position:
659

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1.1
77.6
32.8
Major BPS
53
0.07
1.4
64.5
42.8
Major PPT
88.9
0.88
0.7
81.1
31
Minor 5ss
37.5
-1.4
3.2
49
47.2
Minor BPS
43.2
-0.4
3.6
74.65
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003844
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003928
21294672 - 21311428
16757