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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21317367_21317542_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21317367 - 21317542
Intron Length:
176

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTGCG
5'SS Class:
major
3'SS Sequence:
CTCCTCCGCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
TGGCTCTCACGC
Flanking Amino Acid:
ESRPALSTSDQLCFLVRPRV
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1
59.9
39.3
Major BPS
72.7
0.56
1
75
30.1
Major PPT
70.6
0.46
0.9
68.6
31.8
Minor 5ss
29.8
-2.3
3.1
38.2
40.5
Minor BPS
41.4
-0.6
1.9
48.11
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003869
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019576
21272454 - 21324065
51612
ENSAPLT00000043817
21316429 - 21325065
8637
ENSAPLT00000003995
21316429 - 21322951
6523
ENSAPLT00000042725
21316429 - 21324065
7637
ENSAPLT00000030449
21272454 - 21323950
51497
ENSAPLT00000022732
21316429 - 21324065
7637