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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21317593_21317766_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21317593 - 21317766
Intron Length:
174

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTGGG
5'SS Class:
major
3'SS Sequence:
GCTCTGTCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTGCAA
U12 Branch Point Sequence:
GGGGCTGCAAGC
Flanking Amino Acid:
PRVKTMKYIADIVNADKMSG
Intron Amino Acid Position:
97

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
63.5
42.9
Major BPS
44.3
-0.3
1.5
51.3
44.2
Major PPT
75.8
0.58
0.9
68.9
37.1
Minor 5ss
27.1
-2.6
3
31.9
42.5
Minor BPS
35.9
-1
2.2
39.26
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003869
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022732
21316429 - 21324065
7637
ENSAPLT00000019576
21272454 - 21324065
51612
ENSAPLT00000043817
21316429 - 21325065
8637
ENSAPLT00000003995
21316429 - 21322951
6523
ENSAPLT00000042725
21316429 - 21324065
7637
ENSAPLT00000030449
21272454 - 21323950
51497