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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21318497_21318897_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21318497 - 21318897
Intron Length:
401

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTCAGTAGG
5'SS Class:
major
3'SS Sequence:
GTGCTCCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCCGAT
U12 Branch Point Sequence:
CGCTCCCCGATG
Flanking Amino Acid:
LPEFFRDYFLEGDHRWINSV
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.3
65.4
46
Major BPS
47.5
-0.1
1.3
43.7
39.4
Major PPT
73.5
0.53
0.9
66.4
35.7
Minor 5ss
30.7
-2.2
2.5
31.3
36
Minor BPS
43.1
-0.6
1.9
44.03
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003869
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022732
21316429 - 21324065
7637
ENSAPLT00000019576
21272454 - 21324065
51612
ENSAPLT00000043817
21316429 - 21325065
8637
ENSAPLT00000003995
21316429 - 21322951
6523
ENSAPLT00000042725
21316429 - 21324065
7637
ENSAPLT00000030449
21272454 - 21323950
51497