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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21319224_21319324_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21319224 - 21319324
Intron Length:
101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGGGCT
5'SS Class:
major
3'SS Sequence:
GATCTCCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCGGAT
U12 Branch Point Sequence:
GCGGCCGGATCT
Flanking Amino Acid:
EIGNIFFMDRDTDYVTALCS
Intron Amino Acid Position:
234

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
67.1
35.3
Major BPS
44.5
-0.3
1.5
39
42.9
Major PPT
77.2
0.61
0.9
69.9
36.2
Minor 5ss
25
-2.9
3.6
38
47.1
Minor BPS
39.4
-0.7
2.3
52.93
47.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003869
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022732
21316429 - 21324065
7637
ENSAPLT00000019576
21272454 - 21324065
51612
ENSAPLT00000043817
21316429 - 21325065
8637
ENSAPLT00000003995
21316429 - 21322951
6523
ENSAPLT00000042725
21316429 - 21324065
7637
ENSAPLT00000030449
21272454 - 21323950
51497