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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21319403_21319495_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21319403 - 21319495
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAGGTCGC
5'SS Class:
major
3'SS Sequence:
TCCTTCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TACTCCTCATCC
Flanking Amino Acid:
LVDDTFRIKCGSVDFGPEVT
Intron Amino Acid Position:
260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1.1
58.4
46.6
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
85.3
0.79
0.7
80.4
24.9
Minor 5ss
33.7
-1.9
3.2
44.5
43.5
Minor BPS
57.1
0.2
1.9
67.96
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003869
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019576
21272454 - 21324065
51612
ENSAPLT00000043817
21316429 - 21325065
8637
ENSAPLT00000003995
21316429 - 21322951
6523
ENSAPLT00000042725
21316429 - 21324065
7637
ENSAPLT00000030449
21272454 - 21323950
51497
ENSAPLT00000022732
21316429 - 21324065
7637