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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21319570_21319718_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21319570 - 21319718
Intron Length:
149

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
GTGCTCTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTGCAG
U12 Branch Point Sequence:
TGTGCAGGAGCT
Flanking Amino Acid:
VKVLLNAQDKVFSQIRNEHF
Intron Amino Acid Position:
285

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
0.9
74.2
36.1
Major BPS
44.4
-0.3
1.8
57.1
49.4
Major PPT
76.2
0.59
0.9
69.7
36.7
Minor 5ss
33.1
-1.9
3
43
37.7
Minor BPS
39.5
-0.7
2.4
62.98
46.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003869
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022732
21316429 - 21324065
7637
ENSAPLT00000019576
21272454 - 21324065
51612
ENSAPLT00000043817
21316429 - 21325065
8637
ENSAPLT00000003995
21316429 - 21322951
6523
ENSAPLT00000042725
21316429 - 21324065
7637
ENSAPLT00000030449
21272454 - 21323950
51497