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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21319806_21319886_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21319806 - 21319886
Intron Length:
81

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTCCC
5'SS Class:
major
3'SS Sequence:
TCTCCTTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTCAC
U12 Branch Point Sequence:
GCCACCTCACTG
Flanking Amino Acid:
KSRNLQAQYDRRRGMDIKQM
Intron Amino Acid Position:
314

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
67.9
37.3
Major BPS
63.6
0.34
1
65.3
32.1
Major PPT
85.4
0.8
0.7
80.4
24.8
Minor 5ss
32.5
-2
2.9
41.7
37.6
Minor BPS
43
-0.6
1.8
40.62
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003869
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022732
21316429 - 21324065
7637
ENSAPLT00000019576
21272454 - 21324065
51612
ENSAPLT00000043817
21316429 - 21325065
8637
ENSAPLT00000003995
21316429 - 21322951
6523
ENSAPLT00000042725
21316429 - 21324065
7637
ENSAPLT00000030449
21272454 - 21323950
51497