Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21319978_21320164_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

21319978 - 21320164

Intron Length:

187

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGC|GTAGGTGCT

5'SS Class:

major

3'SS Sequence:

CTTGGCTGTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTAAAA

U12 Branch Point Sequence:

AAGTGTAAAACT

Flanking Amino Acid:

LKQEHRLLSLHIGACESIMK

Intron Amino Acid Position:

344

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

60.2

0.24

1.4

61.3

42.1

Major BPS

0.2

1.2

65.3

38.6

Major PPT

71.5

0.48

65.1

41.2

Minor 5ss

34.9

-1.7

3.5

45.1

43.2

Minor BPS

42.7

-0.4

2.2

59.98

43.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000003869

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030449

21272454 - 21323950

51497

ENSAPLT00000022732

21316429 - 21324065

7637

ENSAPLT00000019576

21272454 - 21324065

51612

ENSAPLT00000043817

21316429 - 21325065

8637

ENSAPLT00000003995

21316429 - 21322951

6523

ENSAPLT00000042725

21316429 - 21324065

7637