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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21320240_21320535_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21320240 - 21320535
Intron Length:
296

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTGAGCACG
5'SS Class:
major
3'SS Sequence:
TGCCCCTGCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTGAC
U12 Branch Point Sequence:
TGCCCCTGCACA
Flanking Amino Acid:
DFQEMIKAEHSLLEGFDIRE
Intron Amino Acid Position:
369

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.3
0.31
1.1
55.7
43.1
Major BPS
54.8
0.12
1.1
46.8
37.9
Major PPT
66
0.36
0.9
60
35.5
Minor 5ss
37.2
-1.5
2.9
51.1
45
Minor BPS
49.3
-0
2
62.68
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003869
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022732
21316429 - 21324065
7637
ENSAPLT00000019576
21272454 - 21324065
51612
ENSAPLT00000043817
21316429 - 21325065
8637
ENSAPLT00000003995
21316429 - 21322951
6523
ENSAPLT00000042725
21316429 - 21324065
7637
ENSAPLT00000030449
21272454 - 21323950
51497