About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21320859_21321129_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21320859 - 21321129
Intron Length:
271

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
ACCCCCTCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
ATCCCAGTGACC
Flanking Amino Acid:
YRSLKTQYLQSYGPEHLLTF
Intron Amino Acid Position:
425

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
68.8
43.8
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
67.3
0.39
0.8
57.6
32.5
Minor 5ss
36
-1.6
3.2
46.7
48.6
Minor BPS
45
-0.4
2.2
58.78
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003869
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003995
21316429 - 21322951
6523
ENSAPLT00000043817
21316429 - 21325065
8637
ENSAPLT00000042725
21316429 - 21324065
7637
ENSAPLT00000030449
21272454 - 21323950
51497
ENSAPLT00000019576
21272454 - 21324065
51612