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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21322048_21322120_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21322048 - 21322120
Intron Length:
73

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGCAG
5'SS Class:
major
3'SS Sequence:
CCGTGCGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCGT
U12 Branch Point Sequence:
GTCTCCGTGCGT
Flanking Amino Acid:
LLGGPEFSEAGGGAEAGPGR
Intron Amino Acid Position:
690

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.1
60.5
45.8
Major BPS
25.7
-1.5
4.1
60.4
45.8
Major PPT
68.5
0.42
1
60.7
40.2
Minor 5ss
28.7
-2.4
3.4
37.1
47.5
Minor BPS
34.9
-1.1
3.8
63.23
47.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003869
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030449
21272454 - 21323950
51497
ENSAPLT00000022732
21316429 - 21324065
7637
ENSAPLT00000019576
21272454 - 21324065
51612
ENSAPLT00000043817
21316429 - 21325065
8637
ENSAPLT00000042725
21316429 - 21324065
7637